F.O.R.W.A.R.D: A Data-Driven Framework for Network-Based Target Prioritization in Drug Discovery.
Publication Year:
2025
PubMed ID:
39071297
Funding Grants:
Public Summary:
Developing new medicines is expensive, slow, and often unpredictable—even with modern advances in artificial intelligence. To help change this, researchers created F.O.R.W.A.R.D (Framework for Outcome-based Research and Drug Development), a new platform that uses real clinical results and advanced machine-learning to identify the most promising drug targets.
They tested F.O.R.W.A.R.D in one of the most difficult areas of medicine: Inflammatory Bowel Diseases (IBD), a chronic condition driven by many different biological pathways. The platform learns what successful treatment looks like at the molecular level using data from seven clinical trials of four different IBD drugs. It then analyzes how likely it is that targeting a specific molecule will shift a patient’s gene activity toward a “remission-like” state.
When they compared F.O.R.W.A.R.D’s predictions with the outcomes of 210 completed clinical trials covering 52 drug targets, it correctly identified which targets would succeed every time—even though those trials varied widely in their design and drug mechanisms. Additional testing using single-cell sequencing and patient-derived organoids showed that the remission signal arises from the gut epithelium and is linked to poor disease outcomes when absent.
F.O.R.W.A.R.D makes it possible to run in-silico (“virtual”) phase-zero trials, helping researchers design better studies, prioritize the most promising targets, salvage drugs that might otherwise be abandoned, and decide early when a trial is unlikely to succeed. Because it can continuously improve as new clinical data emerge, F.O.R.W.A.R.D offers a powerful new way to guide drug discovery—bringing greater foresight to research and supporting smarter, more human-centered decision-making in medicine.
Scientific Abstract:
Despite advances in artificial intelligence (AI), target-based drug development remains costly, complex, and imprecise. We introduce F.O.R.W.A.R.D [ Framework for Outcome-based Research and Drug Development ], a network-based target prioritization platform, and demonstrate its utility in the challenging landscape of Inflammatory Bowel Diseases (IBD), a chronic, multifactorial condition. F.O.R.W.A.R.D uses real-world clinical outcomes, and a machine-learning classifier trained on transcriptomic data from seven prospective randomized trials across four drugs. It defines remission at the molecular level and calculates, using network connectivity, the likelihood that targeting a given molecule will induce remission-associated gene expression. Benchmarking against 210 completed trials across 52 targets, F.O.R.W.A.R.D achieved 100% predictive accuracy-despite variability in drug mechanisms and trial designs. Single-cell RNA-seq and a prospective biobank of patient-derived organoids confirmed that the remission signature is epithelium-specific and tracks with poor outcomes. F.O.R.W.A.R.D enables in-silico phase zero trials to inform trial design, revive shelved drugs, and guide early termination decisions. Broadly applicable and iteratively refined by emerging trial data, F.O.R.W.A.R.D has the potential to reshape drug discovery-bringing foresight to hindsight, and empowering both R&D and human-in-the-loop clinical decision-making.