New Cell Lines
Since their discovery almost ten years ago, there has been steady progress towards the application of human embryonic stem (ES) cells in medicine. Now, the field is on the threshold of a new era. Recent results from several laboratories show that human skin cells can be converted to cells resembling ES cells through simple genetic manipulations in the laboratory. There is currently much excitement about these induced pluripotent stem (iPS) cells, which might have advantages over ES cells in studying and treating disease. However, we do not yet sufficiently understand their nature and potential to be certain that they can replace (ES) cells in research and therapy. Because of this, it is important to continue to develop new ES cell lines, and to compare their properties with those of iPS cells. Technological advances in ES cell research now enable us to grow stem cells under conditions that are much more suitable for future patient use than those used to develop the first ES cell lines. However, these new methodologies have for the most part been developed with, and tested on, a handful of the long-established ES cell lines on the NIH Registry. In this proposal, we will rigorously test improved techniques for growing stem cells, developed in our lab and elsewhere, to see how well they work in deriving new ES cell lines. We will ensure that these new methods allow for production and maintenance of ES cells free of genetic abnormalities. Current technology for producing iPS cell lines also has significant limitations. Published procedures run the risk of producing genetic damage in the stem cells, and rely on the use of cancer causing genes. Also, using current techniques it is more difficult to produce of iPS cells from adult tissue (the most appropriate source for therapy) than from fetal tissue. This proposal examines alternate approaches to generating iPS cells aimed to circumvent these limitations. Using these improved technologies, we will carefully compare the properties of ES cells and iPS cells derived and propagated under identical conditions. This is important, because to find out if iPS cells really are equivalent to ES cells, we have to compare examples of both cell types made and grown under the same conditions. Otherwise, differences that we see may be related to how the cells were produced and propagated, or how long they have been grown in the laboratory, rather than to inherent differences between them. The significance of this research is threefold. First, new ES cell lines suitable for therapeutic use will be derived from embryos and made available to any researcher who requires them. Second, we will answer the important scientific question over the equivalency of ES and iPS cells under experimental conditions that remove variables related to cell culture techniques and cell age. Finally, we will improve and validate the technology for derivation and maintenance of ES and iPS cells for future clinical use.
Statement of Benefit to California:
Through their support of Proposition 71 the citizens of California recognized the fundamental importance of stem cell research to the future of biotechnology and regenerative medicine. Funding from this initiative enables California scientists to work outside of limits imposed on federally funded research, to develop and study new pluripotent stem cell lines from spare embryos. These embryonic stem (ES) cell lines have the property of pluripotency, or the ability to give rise to any type of body cell. Now, rapid technological progress in methodology for growing embryonic stem cells, and for developing cells with the properties of embryonic stem cells from adult tissue, provide new opportunities for producing stem cell lines that are safe for patient use, or for producing cell lines that will avoid the problems of tissue rejection during transplantation. However, in many ways these new technologies are as yet untested. This proposal is aimed at applying and assessing new methods for making pluripotent stem cells from embryos or from adult tissue. We will capitalize on our extensive experience in deriving and characterizing stem cell lines, to achieve three goals: first, the development of new cell lines under conditions that ensure they will be as safe as possible for use in patients; second, development of improved techniques for making pluripotent cell lines from embryos or adult tissues; third, a clear answer to the key question of whether stem cells from adult tissues are equivalent in potential to those from embryos. These advances will ensure that the best possible stem cell lines are available to Californian scientists, physicians and their future patients. Through this program, stem cell research in the State will remain at the forefront of the field and will lead in technological innovation in cell culture biotechnology, as well as in basic science and translational and clinical research. Finally the ability to derive new cell lines from embryos and carefully compare them to cell lines from adult tissue will provide data that is critical to the future of the field and to directing the research efforts of the California Institute for Regenerative Medicine.
Executive Summary This proposal aims to generate new human embryonic stem cell (hESC) lines derived under defined, xeno-free conditions while testing methods to improve derivation efficiency. This proposal also aims to generate induced pluripotent stem cells (iPSC) under similar culture conditions, initially using the established methods employing integrating lentiviral vectors, followed by testing alternate approaches to induce pluripotency that may be more compatible with clinical use. Once established, both cell populations, hESC and iPSC, will be rigorously characterized and compared using immunological, molecular, and biochemical approaches. The proposed aim to more carefully define hESC culture conditions addresses an important step towards generating hESC that can be used clinically, and its feasibility is supported by excellent preliminary data on defined culture conditions. Furthermore, a careful comparison of hESC and iPSC is needed – the enthusiasm for the latter may still be premature and studies such as this are crucial. It is essential, as is proposed in this application, to compare cells that have been treated in the same way. Equally, the development of new technologies to generate iPSC is required, given that cells with multiple viral insertions will not be suitable for clinical applications. Minor weaknesses of this proposal are the lack of detail in the description of the proposed small molecule approach, and the observation that the proposed cytoplast approach appears very inefficient. However, these can be improved and are not central to the key goals of the grant. This is a very straightforward and highly structured application. The experimental methods are broad, but clearly delineated, and the timelines proposed are feasible. The principal applicant is a highly experienced and pioneering stem cell biologist who has extensive experience in the characterization and differentiation of human pluripotent stem cells and has published extensively in the area of hESC. S/he has assembled a very accomplished team, although the reviewers were concerned that both the applicant and a crucial collaborator seem already heavily committed to other work. The cell lines derived under this project will be distributed to academic groups under a simple MTA at no cost to collaborative research groups. In addition, the cell lines will also be banked in the UK stem cell bank. Reviewer Synopsis There are two primary aspects of this project. The first is to generate new human embryonic stem cell lines using defined culture conditions, and secondly to use the new technology of induced pluripotency to generate equivalent iPS cell lines. Once established, both cell populations will be rigorously characterized and compared using immunological, molecular, and biochemical approaches. Reviewer One Comments Significance: To date most human embryonic stem cell lines have been derived using mouse or human feeders in the presence of serum or other animal products. Therefore there is a pressing need for more carefully defined culture conditions. The strength of this project is previous publications in the propagation of the existing cell lines using highly defined culture conditions. One goal of this project will be to generate new human embryonic stem cell lines using defined culture conditions. The second major aim of the project is to further assess the generation of iPS cells using both existing protocols as well as the use of non-integrating lentiviruses, cytoplasmic fusion, and induction of pluripotency without genetic modification. Feasibility: This is a very straightforward and highly structured application to generate new populations of human ES cells either from human embryos or through induction of pluripotency from human somatic cells. The principal applicant is a highly experienced and pioneering stem cell biologist who has published extensively in the area of human ES cells. The first goal of this project is to generate new human ES cells using serum free chemically defined media in combination with chemically defined extracellular matrix proteins. The applicants have previously published on the successful propagation of pre-existing hES cell lines in defined media and this will be used as a starting point for attempting to derive new hES cell lines. The second major aim of the project is to use methods recently published by several groups shown to be capable of converting human somatic cells into ES like cells using genetic modification. The applicants propose to follow initially the established methods using integrating lentiviral vectors but will also attempt to achieve similar cells using non-integrating lentiviral vectors. They will also attempt an alternate approach to achieve reprogramming without genetic modification using fusion of somatic cells with enucleated cytplasts of ES cells. Once each type of cell line has been established, the applicants will rigorously compare and contrast hES cells and IPS derived hES-like cells using standard and well characterized methodology. The applicant has been one of the pioneers in human ES cell biology and has extensive experience in the characterization and differentiation of human pluripotent stem cells. Responsiveness to RFA: Methodologies to characterize the human embryonic stem cell lines defined in this project are well articulated and within the expertise of the applicant. In addition, cell lines derived under this project will be distributed to academic groups under a simple MTA at no cost to collaborative research groups. In addition the cell lines will also be banked in the UK stem cell bank. Reviewer Two Comments Significance: This proposal aims to generate new hES cell lines derived under defined, xeno-free conditions while testing methods to improve derivation efficiency - these are important steps towards generating hES cells that can be used clinically. This proposal also aims to generate iPS cells under similar conditions while testing alternate approaches to induce pluripotency that may be more compatible with clinical use than the standard lentiviral approach. Feasibility: The PI and the team he has assembled is very accomplished in all aspects of human embryonic stem cell biology. The experimental methods are broad, but clearly delineated. Novel hES cell lines will serve as controls to iPS lines which will be generated using traditional (lentiviral) and alternate methods. Extensive characterization will be performed on the lines to study differences between iPS and hES cells. The timelines proposed are feasible. Responsiveness to RFA: Both hES and iPS cells under defined, xeno-free conditions will be generated and made available to other researchers. This meets the RFA, while also advancing the general understanding of iPS cells. Reviewer Three Comments Significance: A careful comparison of hES cells and iPS cells is needed – the enthusiasm for the latter may still be premature and studies such as this, while seeming pedestrian, are crucial. Equally, the development of new technologies to generate iPS cells is required, given that cells with multiple viral insertions will not be suitable for clinical applications. Feasibility: Strengths are feasibility and the recognition that defined cells and substrates are required if GMP grade hES or iPS cells are to be derived. The point made here that it is essential to compare cells that have been treated in the same way, for example, use of same substrates, is important. Weaknesses are the lack of development of the small molecule approach, and the observation that the cytoplast approach appears very inefficient. However, these can be improved and are not central to the key goals of the grant. Responsiveness to RFA: Excellent