Funding opportunities

Biological relevance of microRNAs in hESC differentiation to endocrine pancreas

Funding Type: 
Basic Biology III
Grant Number: 
RB3-02266
Principle Investigator: 
Funds requested: 
$1 313 649
Funding Recommendations: 
Recommended
Grant approved: 
Yes
Public Abstract: 
There remains an urgent and critical need for a cell-based cure of diabetes, one of the most costly diseases in California. Islet transplantation with persistent immune suppression has shown promise in curing type 1 diabetes (TID). However, one major obstacle towards large scale implementation of this approach is the shortage of engraftable islets. Human ES cells (hESCs), which can undergo unlimited self-renewal and differentiate into all cell types in the body, have the potential to become an unlimited source of pancreatic β cells. Significant challenges, including the lack of chemical defined conditions for reproducibly differentiating hESCs into endocrine precursors (EPs), lack of strategy to purify these EPs to avoid teratoma risk, and destruction of engrafted islets by allogeneic and autoimmune rejection despite persistent immune suppression, hinder clinic development of this promising hESC based therapy. Ongoing research in our laboratories is directed at developing novel strategies to derive β-cells from hESCs. Of the several genetic factors that contribute to stem cells differentiation, miRs (microRNAs) are emerging as important determinants. We hypothesize that identification and validation of the temporal expression of miRs at discrete, functionally defined and genetically marked stages of hESC differentiation to insulin-producing cells, when combined with a computational/systems biology approach, will create a population of cells of significant therapeutic impact. The proposed studies will translate basic large-scale analysis of miR and mRNA from pancreatic precursors derived from hESC into a fundamental understanding of differentiation. This in turn will ultimately lead to novel treatments for T1D. In this project we will elucidate the importance of miRs in pancreatic cell differentiation through functional testing, genetic marking, deep sequencing, computational analysis, and validation. Within the context of the above-stated general aims the sequencing studies will be initiated for 3 reasons: 1) to establish on site the most powerful approaches currently available for measuring gene identity and expression 2) to ensure that novel and established miRs are evaluated for changes in expression during hESC differentiation 3) to validate targets of miR action. Application of this emerging technology to β-cell genesis will allow the generation of miR and mRNA profiles from uniform cell populations and validation through functional assays. Together, this information will help to better understand, describe, and ultimately optimize hESC differentiation. Basic research from this project has the potential to create a paradigm shift in understanding the cellular ontogeny of the pancreas and help identify which cell types can be used for transplantation therapy in T1D.
Statement of Benefit to California: 
Diabetes has devastating consequences on both those afflicted and on State/National healthcare costs, and, given the staggering rise in both occurrence and costs, diabetes alone possesses the potential to completely overwhelm our healthcare system. There remains an urgent and critical need for a cell-based cure. In 2007, diabetes directly affected 1 in 10 Californians (2.7 million), costing the state $24.5B annually. There have been documented, significant increases in the occurrence of both type 1 and type 2 diabetes in youths under 18 years of age (0.16% of youth <18 yr have type 1 diabetes nationally). There are more than 7,000 diabetic children within [REDACTED] alone. The following alarming statistics are provided by the California Department of Public Health, California Diabetes Control Program, CDC and NIH/NIDDK: • In the U.S., diabetes is the most costly chronic disease, costing $132B annually. This is predicted to rise to $192B by 2020. • Nearly 1 in 3 Medicare dollars and 1 in 10 of U.S. healthcare dollars are spent treating diabetes. • Diabetics average $13,243/year in health care costs, 2.4 times more than non-diabetics. • 7% of the US population has diabetes. • Every 24 hours, 4,100 Americans are diagnosed with diabetes, 613 American diabetics die of the disease and another 55 go blind. • Worldwide, every 10 seconds a diabetic dies and two new people develop diabetes. • Worldwide expenditures on insulin alone are estimated to be $15 billion annually and growing. This research would benefit the State of California and its citizens on multiple fronts. First and foremost, positive results will create a new development candidate for cell-based therapy for type 1 diabetes with the potential for avoiding the risk of tumor formation - a consequence that hinders the development of any human ES cell based therapy. Second, the application of new technologies would enhance the prospects for new biological agents that will require scale up efforts not available to academics. The creation of progenitor cells for any chronic disease, diabetes in our case, will enhance the prospects for the increase in personnel at the scientific and technical level for both academic labs and biotech companies. Finally, this work may obviate the need for immune suppression therapy that today carries serious side effects including propensity to infections and cancer, abnormalities in lipid metabolism and hypertension, and even damage to the transplanted cells as it occurs following islet transplantation procedures, the only available therapy nowadays for insulin-dependent diabetes. Avoidance of these complications represents a significant positive step in the reduction of health care expenses directly attributed to diabetes and its complications.
Review Summary: 
Project Synopsis: The goal of this project is to define the role of microRNAs (miRs) in human embryonic stem cell (hESC) differentiation to pancreatic beta cells. The team proposes to employ biochemical methods and computational approaches to achieve this goal. In Aim 1 they will generate miR expression profiles of various cell populations at defined stages of differentiation to select candidate miRs for functional analyses. hESC will be engineered to express markers indicative of specific endocrine precursor phenotypes, thus enabling purification of homogenous cell populations prior to analysis. In Aim 2, the team plans to identify mRNA targets of candidate miRs using a state of the art biochemical approach and to assess miR roles during in vitro differentiation and after experimental transplantation. Furthermore, continued software development will aid in analysis of deep sequencing data in Aim 1 and miR ╨ mRNA target interactions in Aim 2. Significance and Innovation: - This application addresses an important biological question with significant translational implications. - Islet transplantation is currently the only cell-based treatment for type 1 diabetes (T1D) and its success is limited by the paucity of sufficient donor tissue, and the quality and functionality of cells obtained after isolation. If successful, this study could have a major impact on cell replacement therapy in patients with T1D. - Current protocols for generating beta cells from hESCs have limited reproducibility, low yield and do not produce a functional glucose-responsive cell in vitro. Understanding the role of miRs in the differentiation of human beta cells should bring us closer to being able to generate functional beta cells. - Although others have reported on miR expression profiles in beta cells, the analysis of several stages during beta cell differentiation in Aim 1 is somewhat innovative. Aim 2 is very innovative and should be prioritized. - Reviewers differed in their opinion regarding the proposed software development. Whereas some described that aspect of the proposal as innovative, others suggested the applicants use available programs rather than relying on software that still requires refinement. Feasibility and Experimental Design: - In general, the feasibility of the proposed research, and the quality of the experimental design are very good. The studies are logical in design and should yield meaningful results. They are well organized, somewhat complex and should be achievable. - One reviewer felt that the preliminary data showed the effectiveness of the team╒s approach whereas another reviewer described the preliminary data as being modest. - The investigators do not consider that lentiviral infection and forced gene expression may themselves affect the miR profile in the cell populations to be analyzed. - The timeline and milestones are provided in excellent detail. Principal Investigator (PI) and Research Team: - The PI is a well-trained biochemist with expertise in molecular biology and the use of hESC. The publication record is modest. - This team has strong expertise in islet expansion and cell signaling but little miR experience. - This is a highly integrative and complementary research team that brings significant expertise to the project. They have worked together over the past years. - The available research facilities are appropriate for the proposed studies. Responsiveness to the RFA: - Reviewers agreed that the proposal is responsive to the RFA as the study will follow the differentiation of hESC into pancreatic progenitor cells to identify regulators of endocrine cell development.
Conflicts: 

© 2013 California Institute for Regenerative Medicine